Gap4 is part of the "Staden package", and was developed by RodgerStaden, James Bonfield, and coworkers at the MRC Cambridge. Please fillout our informationrequest form for pricing information. For more information on obtaining Consed for free for restricted academic use, please visit Consed licenses and support for unrestricted use and use atfor-profit institutions are available through CodonCode. On Mac OSX, Consed requires that X11 (freely available from Apple) is installed.įor academic users and restricted research use, Consed is available for free directly from the authors. Consed is the tool of choice very large projects,or for high-throughput operations that can make use of Consed's "autofinish"features.Ĭonsed is available only for Linux and UNIX, including Mac OS X. You can read more about Aligner, and download demo versions, at ConsedĬonsed was developed specifically for use with Phred and Phrap.Consed offers a interactive functions as well as powerful methods for"autofinishing" - automatic picking of additional sequence reads andwalking primers to close gaps and eliminate low-quality problems inlarge scale sequencing projects. Phred and Phrap provide functions for base calling and sequenceassembly, but no functions for viewing and editing assemblies.Depending on the operating system you are using, there are severalchoices for "contig editors":ĬodonCode Aligner is a sequence assembly and contig editor program developed with the goal to offer (a) and easy-to-learn, intuitive user interface, and (b) full support for the superior algorithms provided by Phred-Phrap.ĬodonCode Aligner is available for Mac OS X and Windows, and is well suited for small and medium-size projects. Contig Editors for Phred-Phrap Contig Editors for Phred-Phrap
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